RNA-seq Differential Expression Analysis Using Galaxy

fredhutch.io is an initiative to facilitate education about and promote access to computational resources at the Fred Hutchinson Cancer Research Center. It was started byErick MatsenandBrian Claywelland funded through and reviewed by the Public Heath Sciences division.

fredhutch.io

This hands-on workshop for Fred Hutch employees and affiliates is an introduction to RNA-seq differential expression analysis using Galaxy. No prior Galaxy experience is required. By working through the tutorial, attendees will learn how to use Galaxy to perform basic differential expression analysis of an RNA-seq experiment, including:
<UL>
<LI>Fetching data from public sources</LI>
<LI>Mapping reads to a reference genome with TopHat2</LI>
<LI>Counting reads mapping to genes</LI>
<LI>Testing for differential expression with DESeq2</LI>
</UL>
 
Attendees must bring a laptop to the course. Please be sure your laptop can connect to the Marconi on-campus wireless network prior to the class, and use your fredhutch.org or affiliate email address when registering!

M1-A303

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RNA-seq Differential Expression Analysis Using Galaxy

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RNA-seq Differential Expression Analysis Using Galaxy

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