NGS data training: basic course on CLC Genomics Workbench

Dr Mita ManciniKey Account Manager GermanyNGS Informatic solution Qiagen

Dr. Mita Mancini (Qiagen)

<P STYLE="text-indent: 0in; margin-top: 3.6pt; margin-bottom: 0pt; margin-left: 0in; text-align: center; direction: ltr; unicode-bidi: embed;"><SPAN STYLE="font-size: large; font-family: arial, helvetica, sans-serif; color: #333333;">NGS data analysis:  Basic training on Genomics Workbench</SPAN></P>
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<P><SPAN STYLE="font-family: arial, helvetica, sans-serif; color: #333333; font-size: medium;">September 7th: Beginners level</SPAN></P>
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<P STYLE="margin-top: 0pt; margin-bottom: 0pt; margin-left: 0in; direction: ltr; unicode-bidi: embed;"><SPAN STYLE="font-size: 14pt; font-family: Arial;">Workshop runs from 9:00 - 16:30</SPAN></P>
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<DIV STYLE="margin-top: 0pt; margin-bottom: 0pt; margin-left: 0.31in; text-indent: -0.31in; direction: ltr; unicode-bidi: embed;"><SPAN STYLE="font-size: 14.0pt;"><SPAN STYLE="font-family: Arial;">•</SPAN></SPAN><SPAN STYLE="font-size: 14pt; font-family: Arial;">9:00 – 10:45  </SPAN><SPAN STYLE="font-size: 14pt; font-family: Arial; font-weight: bold;">Resequencing of genome, exome and amplified targets (panels)</SPAN></DIV>
<DIV STYLE="margin-top: 0pt; margin-bottom: 0pt; margin-left: 0.31in; text-indent: -0.31in; direction: ltr; unicode-bidi: embed;"><SPAN STYLE="font-size: 14.0pt;"><SPAN STYLE="font-family: Arial;">•</SPAN></SPAN></DIV>
<DIV CLASS="O4" STYLE="margin-top: 0pt; margin-bottom: 0pt; margin-left: 2.31in; text-indent: -0.31in; direction: ltr; unicode-bidi: embed;"><SPAN STYLE="font-size: 14.0pt;"><SPAN STYLE="font-family: Wingdings;">§</SPAN></SPAN><SPAN STYLE="font-size: 14pt; font-family: Arial;">Variant detection, annotation and filtering</SPAN></DIV>
<DIV CLASS="O4" STYLE="margin-top: 0pt; margin-bottom: 0pt; margin-left: 2.31in; text-indent: -0.31in; direction: ltr; unicode-bidi: embed;"><SPAN STYLE="font-size: 14.0pt;"><SPAN STYLE="font-family: Wingdings;">§</SPAN></SPAN><SPAN STYLE="font-size: 14pt; font-family: Arial;">Integration with Ingenuity Variant Analysis</SPAN></DIV>
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<DIV STYLE="margin-top: 0pt; margin-bottom: 0pt; margin-left: 0.31in; text-indent: -0.31in; direction: ltr; unicode-bidi: embed;"><SPAN STYLE="font-size: 14.0pt;"><SPAN STYLE="font-family: Arial;">•</SPAN></SPAN><SPAN STYLE="font-size: 14pt; font-family: Arial; font-style: italic;">10:45 – 11:00</SPAN><SPAN STYLE="font-size: 14pt; font-family: Arial;">  </SPAN><SPAN STYLE="font-size: 14pt; font-family: Arial; font-style: italic;">Coffee break</SPAN></DIV>
<DIV STYLE="margin-top: 0pt; margin-bottom: 0pt; margin-left: 0.31in; text-indent: -0.31in; direction: ltr; unicode-bidi: embed;"><SPAN STYLE="font-size: 14.0pt;"><SPAN STYLE="font-family: Arial;">•</SPAN></SPAN></DIV>
<DIV STYLE="margin-top: 0pt; margin-bottom: 0pt; margin-left: 0.31in; text-indent: -0.31in; direction: ltr; unicode-bidi: embed;"><SPAN STYLE="font-size: 14.0pt;"><SPAN STYLE="font-family: Arial;">•</SPAN></SPAN><SPAN STYLE="font-size: 14pt; font-family: Arial;">11:00 – 13:00  </SPAN><SPAN STYLE="font-size: 14pt; font-family: Arial; font-weight: bold;">RNA-</SPAN><SPAN STYLE="font-size: 14pt; font-family: Arial; font-weight: bold;">seq</SPAN><SPAN STYLE="font-size: 14pt; font-family: Arial; font-weight: bold;"> & </SPAN><SPAN STYLE="font-size: 14pt; font-family: Arial; font-weight: bold;">Epigenomics</SPAN></DIV>
<DIV STYLE="margin-top: 0pt; margin-bottom: 0pt; margin-left: 0.31in; text-indent: -0.31in; direction: ltr; unicode-bidi: embed;"><SPAN STYLE="font-size: 14.0pt;"><SPAN STYLE="font-family: Arial;">•</SPAN></SPAN></DIV>
<DIV CLASS="O4" STYLE="margin-top: 0pt; margin-bottom: 0pt; margin-left: 2.31in; text-indent: -0.31in; direction: ltr; unicode-bidi: embed;"><SPAN STYLE="font-size: 14.0pt;"><SPAN STYLE="font-family: Wingdings;">§</SPAN></SPAN><SPAN STYLE="font-size: 14pt; font-family: Arial;">Differential gene/transcript expression</SPAN></DIV>
<DIV CLASS="O4" STYLE="margin-top: 0pt; margin-bottom: 0pt; margin-left: 2.31in; text-indent: -0.31in; direction: ltr; unicode-bidi: embed;"><SPAN STYLE="font-size: 14.0pt;"><SPAN STYLE="font-family: Wingdings;">§</SPAN></SPAN><SPAN STYLE="font-size: 14pt; font-family: Arial;">Transcript discovery</SPAN></DIV>
<DIV CLASS="O4" STYLE="margin-top: 0pt; margin-bottom: 0pt; margin-left: 2.31in; text-indent: -0.31in; direction: ltr; unicode-bidi: embed;"><SPAN STYLE="font-size: 14.0pt;"><SPAN STYLE="font-family: Wingdings;">§</SPAN></SPAN><SPAN STYLE="font-size: 14pt; font-family: Arial;">ChIP-seq</SPAN></DIV>
<DIV CLASS="O4" STYLE="margin-top: 0pt; margin-bottom: 0pt; margin-left: 2.31in; text-indent: -0.31in; direction: ltr; unicode-bidi: embed;"><SPAN STYLE="font-size: 14.0pt;"><SPAN STYLE="font-family: Wingdings;">§</SPAN></SPAN><SPAN STYLE="font-size: 14pt; font-family: Arial;">Data visualization and integration with Ingenuity Pathway Analysis</SPAN></DIV>
<DIV STYLE="margin-top: 0pt; margin-bottom: 0pt; margin-left: 0.31in; text-indent: -0.31in; direction: ltr; unicode-bidi: embed;"><SPAN STYLE="font-size: 14.0pt;"><SPAN STYLE="font-family: Arial;">•</SPAN></SPAN></DIV>
<DIV STYLE="margin-top: 0pt; margin-bottom: 0pt; margin-left: 0.31in; text-indent: -0.31in; direction: ltr; unicode-bidi: embed;"><SPAN STYLE="font-size: 14.0pt;"><SPAN STYLE="font-family: Arial;">•</SPAN></SPAN><SPAN STYLE="font-size: 14pt; font-family: Arial; font-style: italic;">13:00 – 14:00  Lunch break</SPAN></DIV>
<DIV STYLE="margin-top: 0pt; margin-bottom: 0pt; margin-left: 0.31in; text-indent: -0.31in; direction: ltr; unicode-bidi: embed;"><SPAN STYLE="font-size: 14.0pt;"><SPAN STYLE="font-family: Arial;">•</SPAN></SPAN></DIV>
<DIV STYLE="margin-top: 0pt; margin-bottom: 0pt; margin-left: 0.31in; text-indent: -0.31in; direction: ltr; unicode-bidi: embed;"><SPAN STYLE="font-size: 14.0pt;"><SPAN STYLE="font-family: Arial;">•</SPAN></SPAN><SPAN STYLE="font-size: 14pt; font-family: Arial;">14:00 – 16:00  </SPAN><SPAN STYLE="font-size: 14pt; font-family: Arial; font-weight: bold;">Microbial Genomics</SPAN></DIV>
<DIV CLASS="O3" STYLE="margin-top: 0pt; margin-bottom: 0pt; margin-left: 1.81in; text-indent: -0.31in; direction: ltr; unicode-bidi: embed;"><SPAN STYLE="font-size: 14.0pt;"><SPAN STYLE="font-family: Arial;">•</SPAN></SPAN></DIV>
<DIV CLASS="O4" STYLE="margin-top: 0pt; margin-bottom: 0pt; margin-left: 2.31in; text-indent: -0.31in; direction: ltr; unicode-bidi: embed;"><SPAN STYLE="font-size: 14.0pt;"><SPAN STYLE="font-family: Wingdings;">§</SPAN></SPAN><SPAN STYLE="font-size: 14pt; font-family: Arial;">Microbial profiling (taxonomical & functional)</SPAN></DIV>
<DIV CLASS="O4" STYLE="margin-top: 0pt; margin-bottom: 0pt; margin-left: 2.31in; text-indent: -0.31in; direction: ltr; unicode-bidi: embed;"><SPAN STYLE="font-size: 14.0pt;"><SPAN STYLE="font-family: Wingdings;">§</SPAN></SPAN><SPAN STYLE="font-size: 14pt; font-family: Arial;">NGS-based pathogen typing</SPAN></DIV>
<DIV STYLE="margin-top: 0pt; margin-bottom: 0pt; margin-left: 0.31in; text-indent: -0.31in; direction: ltr; unicode-bidi: embed;"><SPAN STYLE="font-size: 14.0pt;"><SPAN STYLE="font-family: Arial;">•</SPAN></SPAN></DIV>
<DIV STYLE="margin-top: 0pt; margin-bottom: 0pt; margin-left: 0.31in; text-indent: -0.31in; direction: ltr; unicode-bidi: embed;"><SPAN STYLE="font-size: 14.0pt;"><SPAN STYLE="font-family: Arial;">•</SPAN></SPAN><SPAN STYLE="font-size: 14pt; font-family: Arial;">16:00 – 16:30  Q&A</SPAN></DIV>
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<P> </P>
<P STYLE="margin-top: 0pt; margin-bottom: 0pt; margin-left: 0in; text-align: justify; direction: ltr; unicode-bidi: embed;"><SPAN STYLE="font-family: arial, helvetica, sans-serif; font-size: medium; color: #333333;">The training course is open to all and free of charge.</SPAN></P>
<P STYLE="margin-top: 0pt; margin-bottom: 0pt; margin-left: 0in; text-align: justify; direction: ltr; unicode-bidi: embed;"><SPAN STYLE="font-family: arial, helvetica, sans-serif; font-size: medium; color: #333333;">You can attend only part of the workshop, if you are interested only in one application</SPAN></P>
<P STYLE="margin-top: 0pt; margin-bottom: 0pt; margin-left: 0in; text-align: justify; direction: ltr; unicode-bidi: embed;"><BR></P>
<P STYLE="margin-top: 0pt; margin-bottom: 0pt; margin-left: 0in; text-align: justify; direction: ltr; unicode-bidi: embed;"><SPAN STYLE="font-size: medium; font-family: arial, helvetica, sans-serif; color: #333333;">Due to the limited number of seats, please inform us if you need to cancel your registration</SPAN></P>
<P STYLE="margin-top: 0pt; margin-bottom: 0pt; margin-left: 0in; text-align: justify; direction: ltr; unicode-bidi: embed;"><SPAN STYLE="font-family: arial, helvetica, sans-serif; color: #333333;"> </SPAN></P>

LRZ Leibniz-Rechenzentrum der Bayerischen Akademie der Wissenschaften

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NGS data training: basic course on CLC Genomics Workbench

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