Jupyter Notebooks – using Python on the HPC

Hands-on tutorials to help build skills required in Precision Child Health, data science and bioinformatics. The training is prepared for staff and trainees at SickKids and beyond by the Centre for Computational Medicine (CCM).

This is a hybrid event offered both in-person and online.

This presentation covers the basics of using Jupyter Notebook and Jupyter Lab on High-Performance Computing cluster (HPC). ​

Topics include:

• Using Open OnDemand​
• Using the terminal​
• Conda environments​
• Creating Python and R kernels​
• Creating Jupyter Notebooks

Sponsors

This course is supported by:

• Centre for Computational Medicine, SickKids
• Digital Research Alliance of Canada and Compute Ontario