Intro to Single-Cell Analysis Workshop

Biomedical Research Core Facilities (BRCF)

A 3 x ½ day virtual, hands-on workshop on single-cell RNA-Seq analysis. (University of Michigan Bioinformatics Core)

Bioinformatics Core

The Bioinformatics Core helps researchers identify/interpret patterns in RNA/DNA by placing sequencing data into a biologically meaningful context. This includes experimental design, developing reproducible workflows, analyzing NGS data, and publications.

Workshop schedule (Please note that workshop dates changed after original announcement.)10/23-25, 9:00 AM-1:00 PM ETRegistration closes 10/16/2024.About the workshop:This workshop is targeted toward researchers who would like to better understand the analysis of single-cell RNA-Seq data. By the end of this workshop, participants will be able to:<ul><li>Describe (at a high level) how single-cell samples are sequenced along with strengths of a few popular library preps.</li><li>Create and interpret preliminary QC visualizations from a single-cell experiment.</li><li>Use PCA and UMAP to create cell-type clusters.</li><li>Execute and visualize differential expression across clusters.</li><li>Identify marker genes and annotate clusters based on gene expression.</li></ul>More details:<ul><li>The cost is $390/seat.</li><li>The workshop is entirely online and will be conducted over Zoom and Slack.</li><li>Basic understanding of NGS sequencing protocols and/or familiarity with bulk RNA-Seq analysis is desirable. This workshop assumes some experience working with R/R-Studio. (Previous attendance in a Computational Foundations workshop or Software Carpentry workshop is sufficient.)</li><li>The workshop experience is designed to be interactive and includes a combination of lecture, live-coding, and opportunities for questions throughout. </li></ul>We are able to refund workshop fees for cancellations prior to 10/16/2024 (when registration closes).For more questions, please email us at bioinformatics-workshops@umich.edu or see the <a href="https://brcf.medicine.umich.edu/cores/bioinformatics-core/" title="https://brcf.medicine.umich.edu/cores/bioinformatics-core/" target="_blank" data-msys-clicktrack="0" rel="nofollow noopener noreferrer">Bioinformatics Core website</a>. <h3>Note to University of Michigan attendees:</h3>You will be prompted to enter a shortcode and shortcode owner/administrator during checkout. We will bill your short code via miCores at the conclusion of the workshop.

Intro to Single-Cell Analysis Workshop

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Intro to Single-Cell Analysis Workshop

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