Intermediate: Scripting pathway analysis

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Intermediate: Scripting pathway analysis

Intermediate: Scripting pathway analysis

By Gladstone Bioinformatics Core

When and where

Date and time

Monday, October 21, 2019 · 1 - 5pm PDT


UCSF Mission Bay Campus 550 16th Street Mission Hall Room1407 San Francisco, CA 94158

About this event

This intermediate-level course will provide you with an introduction to Pathway Analysis using R. First, Alex Pico from the Gladstone Bioinformatics Core will introduce you to common software tools and methods for functional enrichment analysis of omics data, including WikiPathways, Cytoscape, RStudio, and the R packages: clusterProfiler, rWikiPathways, and RCy3. Then, in a hands-on portion, you’ll walk through a basic enrichment analysis, including basic data visualization and exploration. Advanced topics on pathway visualization and publishing figures will also be covered, and time will be reserved for you to work with your own data and project topics.

About the organizer

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