This will be a highly informative, action-packed event including both 10x and customer speakers, software demos, poster sessions, and evening dinner/entertainment. Please note there will be a substantial prize (consumables!) for the best poster (as selected by the 10x team) – if you are interested in displaying your work please email a 1-page summary, including author affiliations, to: scott.brouilette@10xgenomics.com .

Current agenda:

Thursday 13th September

11:00 – 12:30 - REGISTRATIONS & LUNCH

12:30 – 12:40 - Welcome & introduction - Annika Branting, Regional Marketing Manager,
10x Genomics & Valentina Libri, Institut Pasteur

12:40 – 13:05 - 10x Technology & applications - Kamila Belhocine, Staff Scientist, 10x Genomics

13:05 – 13:25 - Single-cell network interference as a new approach to better characterise auto-inflammatory disease - Mickael Ménager, Lab Director, Team Atip-Avenir, Institut Imagine - Inserm

13:25 – 13:50 - Immune profiling with single cell genomics - Stephen Hague, Technical Sales Specialist, 10x Genomics

13:50 – 14:05 - RNA in the time of Tinder: Matching TCR with transcriptome of CD4 T cells from NSCLC patients - Jimena Tosello, Post-doc, Translational Immunotherapy Team, Institut Curie

14:05 – 14:25 - Long DNA molecule sequencing by 10X Chromium technology for de novo assembly & chromosome level scaffolding of plant genomes - Mohamed Zouine, Assoc. Prof., GBF Lab, Toulouse INP-ENSAT

14:25 – 14:40 - Duchenne muscular dystrophy phenotype during myogenic differentiation - Virginie Mournetas, Post-doc, I-Stem, Paris

14:40 – 15:40 - REFRESHMENTS & BOOTHS - ROOM 06
15:00 - 15:30 - SOFTWARE DEMOS (AMPHITHEATER DUCLAUX)

15:40 – 16:00 - Improving genome assemblies of non-human & highly complex plant & metagenomic samples - Sven Warris, Bioinformatics Researcher, Wageningen University And Research Centre

16:00 – 16:20 - Single cell analyses of CD8+ T cells in Suv39h1 KO mice in response to immunotherapy - Paul Gueguen, Unit of Immunity & Cancer, Institut Curie

16:20 – 16:40 - A Single cell transcriptomic approach to better understand cardiac valve development and diseases - Michel Puceat, Team Leader, Development & Physiopathology of the Cardiovascular System, Marseille Medical Genetics, Inserm

16:40 – 16:55 - Multiplexing: Increasing sample throughput while optimising SC experimental design on 10X - Fabiola Curion, Wellcome Centre for Human Genetics, Oxford University

16:55 – 17:15 - Transcriptional dynamics of monocytes to Influenza virus infection - Mary O'Neil, Postdoctoral Researcher, Human Evolutionary Genetics, Institut Pastuer

17:15 – 17:20 - Day 1 Wrap Up - Annika Branting, Regional Marketing Manager,
10x Genomics & Valentina Libri, Institut Pasteur

19:30 - Late - Dinner and River Cruise (Registration Required)

Friday 14th September

08:45 – 08:50 - Welcome back - Annika Branting, Regional Marketing Manager, 10x Genomics & Valentina Libri, Institut Pasteur

08:50 – 09:15 - Interrogating Chromatin Accessibility and Regulatory Landscape at Single Cell Resolution - Anushka Brownley, Product Manager, 10x Genomics

09:15 – 09:35 - Using linked-reads & targeted capture to phase clinically-relevant loci - Susan L Kloet, Team Leader, Leiden Genome Technology Centre

09:35 – 09:55 - Single cell RNA sequencing: Standards & Applications - Holger Heyn, Team Leader, Single Cell Genomics, CNAG, Barcelona

09:55 – 10:05 - 10x Support: Resources & updates - Magdalena Nawara, 10x Genomics

10:05 – 10:25 - Improving genome reconstruction from human gut metagenomic samples using 10X Genomics - Francesco Strozzi, Bioinformatics Manager, Enterome, Paris

10:25 – 11:25 - REFRESHMENTS & BOOTHS - ROOM 06
10:45 – 11:15 - SOFTWARE DEMOS (AMPHITHEATER DUCLAUX)

11:25 – 11:40 - Single cell RNAseq data analysis using a collaborative, extendable shiny app - Bernd Jagla, PhD, Biomarker Discovery Platform, UtechS CB & Hub de Bioinformatique et Biostatistiques, C3BI Institut Pasteur

11:40 – 12:00 - Phenotype moulding of stromal cells in the lung tumour microenvironment - Bernard Thienpont, Assistant Professor, Faculty of Medicine, KU Leuven

12:00 – 12:20 - Single cell nanopore RNA sequencing with the 10x Genomics Chromium and the MinIon - Rainer Waldmann, IPMC - CNRS

12:20 – 12:30 - BioLegend Overview - Jean-Baptiste Guillerme, PhD, Technical Application Scientist, BioLegend France SAS

12:30 – 12:40 - Methods for sample preparation for single cell analysis of solid tumours - Jana Soyka, Sr. Global Product Manager, Miltenyi Biotec

12:40 – 13:00 - Charting the diversification of mammalian cells at whole organism scale - Jonathan Griffiths, CRUK Cambridge Institute, Cambridge

13:00 – 13:20 - LINNAEUS: A strategy for massively parallel single cell transcriptome profiling & CRISPR/Cas9-based lineage tracing - Nina Mitic, PhD Student, Junker Lab, Max Delbrück Centre for Molecular Medicine, Berlin

13:20 – 13:30 - Thanks & close - Annika Branting, Regional Marketing Manager, 10x Genomics & Valentina Libri, Institut Pasteur

Be sure to reserve your spot now by clicking on the Register button, and tell your colleagues about it!

The 10x Team

2018 User Group Meeting - Paris