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Read Mapping and Variant Analysis

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Northwest Labs Room 453

28 Oxford St

Cambridge, MA 02138

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This is a 4 hour, hands on workshop that will cover the basic workflow required to preprocess DNA sequencing reads, map them to a reference genome, and call variants. This course is appropriate for people working in both model and non-model organisms. People are expected to bring their own laptop (Mac, Windows or Linux) to use.

The first hour (10 am - 11 am) will focus on experimental design issues, sequencing depth, and sequencing options available at the Bauer core for DNA sequencing experiments.

Prerequisites:

-an Odyssey account and some familarity with the cluster (e.g., the Introduction to Odyssey course)

-basic familarity with working on the Unix command line


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Northwest Labs Room 453

28 Oxford St

Cambridge, MA 02138

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